A database of geopositioned Middle East Respiratory Syndrome Coronavirus occurrences
Identifieur interne : 000D71 ( Main/Exploration ); précédent : 000D70; suivant : 000D72A database of geopositioned Middle East Respiratory Syndrome Coronavirus occurrences
Auteurs : Rebecca E. Ramshaw ; Ian D. Letourneau ; Amy Y. Hong [États-Unis] ; Julia Hon ; Julia D. Morgan ; Joshua C. P. Osborne ; Shreya Shirude ; Maria D. Van Kerkhove [Suisse] ; Simon I. Hay ; David M. PigottSource :
- Scientific Data [ 2052-4463 ] ; 2019.
Abstract
As a World Health Organization Research and Development Blueprint priority pathogen, there is a need to better understand the geographic distribution of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) and its potential to infect mammals and humans. This database documents cases of MERS-CoV globally, with specific attention paid to zoonotic transmission. An initial literature search was conducted in PubMed, Web of Science, and Scopus; after screening articles according to the inclusion/exclusion criteria, a total of 208 sources were selected for extraction and geo-positioning. Each MERS-CoV occurrence was assigned one of the following classifications based upon published contextual information: index, unspecified, secondary, mammal, environmental, or imported. In total, this database is comprised of 861 unique geo-positioned MERS-CoV occurrences. The purpose of this article is to share a collated MERS-CoV database and extraction protocol that can be utilized in future mapping efforts for both MERS-CoV and other infectious diseases. More broadly, it may also provide useful data for the development of targeted MERS-CoV surveillance, which would prove invaluable in preventing future zoonotic spillover.
Url:
DOI: 10.1038/s41597-019-0330-0
PubMed: 31836720
PubMed Central: 6911100
Affiliations:
Links toward previous steps (curation, corpus...)
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- to stream Pmc, to step Curation: 000091
- to stream Pmc, to step Checkpoint: 000280
- to stream Ncbi, to step Merge: 000903
- to stream Ncbi, to step Curation: 000903
- to stream Ncbi, to step Checkpoint: 000903
- to stream Main, to step Merge: 000D73
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Le document en format XML
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Pigott</name><affiliation><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Institute for Health Metrics and Evaluation,</institution><institution>University of Washington,</institution></institution-wrap>2301 5th Ave., Suite 600, Seattle, WA United States</nlm:aff><wicri:noCountry code="subfield">WA United States</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff4"><institution-wrap><institution-id institution-id-type="ISNI">0000000122986657</institution-id><institution-id institution-id-type="GRID">grid.34477.33</institution-id><institution>Department of Health Metrics Sciences, School of Medicine,</institution><institution>University of Washington,</institution></institution-wrap>2301 5th Ave., Suite 600, Seattle, WA United States</nlm:aff><wicri:noCountry code="subfield">WA United States</wicri:noCountry></affiliation></author></analytic><series><title level="j">Scientific Data</title><idno type="eISSN">2052-4463</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">As a World Health Organization Research and Development Blueprint priority pathogen, there is a need to better understand the geographic distribution of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) and its potential to infect mammals and humans. This database documents cases of MERS-CoV globally, with specific attention paid to zoonotic transmission. An initial literature search was conducted in PubMed, Web of Science, and Scopus; after screening articles according to the inclusion/exclusion criteria, a total of 208 sources were selected for extraction and geo-positioning. Each MERS-CoV occurrence was assigned one of the following classifications based upon published contextual information: index, unspecified, secondary, mammal, environmental, or imported. In total, this database is comprised of 861 unique geo-positioned MERS-CoV occurrences. The purpose of this article is to share a collated MERS-CoV database and extraction protocol that can be utilized in future mapping efforts for both MERS-CoV and other infectious diseases. More broadly, it may also provide useful data for the development of targeted MERS-CoV surveillance, which would prove invaluable in preventing future zoonotic spillover.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Zaki, Am" uniqKey="Zaki A">AM Zaki</name></author><author><name sortKey="Van, B" uniqKey="Van B">B Van</name></author><author><name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name></author><author><name sortKey="Osterhaus, Adme" uniqKey="Osterhaus A">ADME Osterhaus</name></author><author><name sortKey="Fouchier, Ram" uniqKey="Fouchier R">RAM Fouchier</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Guery, B" uniqKey="Guery B">B Guery</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thomas, Hl" uniqKey="Thomas H">HL Thomas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Park, Ge" uniqKey="Park G">GE Park</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lau, Skp" uniqKey="Lau S">SKP Lau</name></author><author><name sortKey="Wong, Acp" uniqKey="Wong A">ACP Wong</name></author><author><name sortKey="Lau, Tck" uniqKey="Lau T">TCK Lau</name></author><author><name sortKey="Woo, Pcy" uniqKey="Woo P">PCY Woo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Haagmans, Bl" uniqKey="Haagmans B">BL Haagmans</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gutierrez, C" uniqKey="Gutierrez C">C Gutiérrez</name></author><author><name sortKey="Tejedor Junco, Mt" uniqKey="Tejedor Junco M">MT Tejedor-Junco</name></author><author><name sortKey="Gonzalez, M" uniqKey="Gonzalez M">M González</name></author><author><name sortKey="Lattwein, E" uniqKey="Lattwein E">E Lattwein</name></author><author><name sortKey="Renneker, S" uniqKey="Renneker S">S Renneker</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bernard Stoecklin, S" uniqKey="Bernard Stoecklin S">S Bernard-Stoecklin</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Poletto, C" uniqKey="Poletto C">C Poletto</name></author><author><name sortKey="Boelle, P Y" uniqKey="Boelle P">P-Y Boëlle</name></author><author><name sortKey="Colizza, V" uniqKey="Colizza V">V Colizza</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dighe, Amy" uniqKey="Dighe A">Amy Dighe</name></author><author><name sortKey="Jombart, Thibaut" uniqKey="Jombart T">Thibaut Jombart</name></author><author><name sortKey="Van Kerkhove, Maria D" uniqKey="Van Kerkhove M">Maria D. 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uniqKey="Meyer B">B Meyer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hunter, Jc" uniqKey="Hunter J">JC Hunter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Al Hosani, Fi" uniqKey="Al Hosani F">FI Al Hosani</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yusof, Mf" uniqKey="Yusof M">MF Yusof</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, Y" uniqKey="Li Y">Y Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Habib, Z" uniqKey="Habib Z">Z Habib</name></author><author><name sortKey="Asghar, F" uniqKey="Asghar F">F Asghar</name></author><author><name sortKey="El Masry, K" uniqKey="El Masry K">K El Masry</name></author><author><name sortKey="El Reddy, M" uniqKey="El Reddy M">M El Reddy</name></author><author><name sortKey="Ravi, M" uniqKey="Ravi M">M Ravi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wernery, U" uniqKey="Wernery U">U Wernery</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Buliva, E" uniqKey="Buliva E">E Buliva</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Suisse</li><li>États-Unis</li></country><region><li>Maryland</li></region></list><tree><noCountry><name sortKey="Hay, Simon I" sort="Hay, Simon I" uniqKey="Hay S" first="Simon I." last="Hay">Simon I. Hay</name><name sortKey="Hon, Julia" sort="Hon, Julia" uniqKey="Hon J" first="Julia" last="Hon">Julia Hon</name><name sortKey="Letourneau, Ian D" sort="Letourneau, Ian D" uniqKey="Letourneau I" first="Ian D." last="Letourneau">Ian D. Letourneau</name><name sortKey="Morgan, Julia D" sort="Morgan, Julia D" uniqKey="Morgan J" first="Julia D." last="Morgan">Julia D. Morgan</name><name sortKey="Osborne, Joshua C P" sort="Osborne, Joshua C P" uniqKey="Osborne J" first="Joshua C. P." last="Osborne">Joshua C. P. Osborne</name><name sortKey="Pigott, David M" sort="Pigott, David M" uniqKey="Pigott D" first="David M." last="Pigott">David M. Pigott</name><name sortKey="Ramshaw, Rebecca E" sort="Ramshaw, Rebecca E" uniqKey="Ramshaw R" first="Rebecca E." last="Ramshaw">Rebecca E. Ramshaw</name><name sortKey="Shirude, Shreya" sort="Shirude, Shreya" uniqKey="Shirude S" first="Shreya" last="Shirude">Shreya Shirude</name></noCountry><country name="États-Unis"><region name="Maryland"><name sortKey="Hong, Amy Y" sort="Hong, Amy Y" uniqKey="Hong A" first="Amy Y." last="Hong">Amy Y. Hong</name></region></country><country name="Suisse"><noRegion><name sortKey="Van Kerkhove, Maria D" sort="Van Kerkhove, Maria D" uniqKey="Van Kerkhove M" first="Maria D." last="Van Kerkhove">Maria D. Van Kerkhove</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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